Task ID







  HUMAnN2: The HMP Unified Metabolic Analysis Network 2

HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads). This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. More generally, functional profiling answers the question, "What are the microbes in my community-of-interest doing (or capable of doing)?"

  ARGs_OAP: What does it do?

1. Fast environmental searching of antibiotic resistant gene in multiple metagenomics data sets; the ARGs abundance can be normalized to cell number.
2. Generate mother table of type and sub-type level ARGs of users' samples and a merged sub-type level mother table.
3. Generate a PcoA of users samples with other typical environment samples such as human gut, ocean and sediment to show the relationship of user concerned samples with already sequenced environment.


The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds. You can learn more in http://www.cazy.org/